MSDataReport

class MSDataReport.MSDataReport(output_directory, input_file_path, logger=None, ingui=True)

A class to describe the general setup for Data Reporting

Parameters:

• output_directory (str) – directory path to output the data

• input_file_path (str) – file path of the input MRM transition name file. To be used for the output filename

• logger (object) – logger object created by start_logger in MSOrganiser

• ingui (bool) – if True, print analysis status to screen

class MSDataReport.MSDataReport_PDF(output_directory, input_file_path, logger=None, ingui=True, testing=False)

A class to describe the general setup for Data Reporting in pdf

Parameters:

• output_directory (str) – directory path to output the data

• input_file_path (str) – file path of the input MRM transition name file. To be used for the output filename

• logger (object) – logger object created by start_logger in MSOrganiser

• ingui (bool) – if True, print analysis status to screen

Note

Make sure that the directory msreport is in the same directory as this code See for more info https://pbpython.com/pdf-reports.html on creating html template

create_parameters_report(Parameters_df)

A function to generate the parameter inputs from dataframe to html and store it in a list self.__pdf_pages.

Parameters:

Parameters_df (pandas DataFrame) – A dataframe storing the input parameters

create_ISTD_report(ISTD_Report)

A function to generate ISTD normalisation report from dataframe to html and store it in a list self.__pdf_pages.

Parameters:

ISTD_Report (pandas DataFrame) – A data frame of with transition names, its corresponding ISTD as columns.

output_to_PDF()

A function to convert the list of html in self.__pdf_pages to pages in pdf