MSOrganiser

MSOrganiser.start_logger(log_directory_path)

To set up the log file folder and default configuration give a log directory path

Parameters:

log_directory_path (str) – The directory path to create a folder containing the log files.

Returns:

logger (object) – A logger object used for the MSOrganiser software.

MSOrganiser.get_Parameters_df(stored_args, MS_FilePath=None, MS_FilePaths=[], using_multiple_input_files=False)

To set up a pandas dataframe storing the input parameters, This data frame will be converted to a PDF page

Parameters:

• stored_args (dict) – A dictionary storing the input parameters. The dictionary is created in MSParser

• MS_FilePath (str) – The file path to the MRM transition name file.

• MS_FilePaths (list) – A list of file path to the MRM transition name file.

• using_multiple_input_files (bool) – if True, the Input_File parameter will be constructed from multiple input files, denoted in MS_FilePaths (in development)

Returns:

Parameters_df (pandas DataFrame) – A dataframe storing the input parameters

MSOrganiser.output_concatenated_wide_data(stored_args, concatenate_df_list, concatenate_df_sheet_name, logger=None)

MSOrganiser.output_concatenated_long_table(stored_args, concatenate_df_list, concatenate_df_sheet_name, logger=None)

MSOrganiser.no_concatenate_workflow(stored_args, logger=None, testing=False)

MSOrganiser.concatenate_along_rows_workflow(stored_args, logger=None, testing=False)

MSOrganiser.concatenate_along_columns_workflow(stored_args, logger=None, testing=False)